Package index • Pv3Rs

All functions

RG_to_igraph(): Converts a relationship graph (RG) encoded as a list to an igraph object

compute_posterior(): Compute posterior probabilities of P. vivax recurrence states

determine_MOIs(): Determine multiplicities of infection (MOIs)

enumerate_RGs(): Enumerate relationship graphs (RGs)

fs_VHX_BPD: Allele frequencies computed using example Plasmodium vivax data

plot_RG(): Plot a relationship graph (RG)

plot_data(): Plots the data

plot_simplex(): Plots a 2D simplex

project2D(): Project 3D probability coordinates onto 2D simplex coordinates

sample_RG(): Sample a relationship graph (RG)

ys_VHX_BPD: Example Plasmodium vivax data