Package index
-
RG_to_igraph() - Converts a relationship graph (RG) encoded as a list to an
igraphobject -
compute_posterior() - Compute posterior probabilities of P. vivax recurrence states
-
determine_MOIs() - Determine multiplicities of infection (MOIs)
-
enumerate_RGs() - Enumerate relationship graphs (RGs)
-
fs_VHX_BPD - Allele frequencies computed using example Plasmodium vivax data
-
plot_RG() - Plot a relationship graph (RG)
-
plot_data() - Plots the data
-
plot_simplex() - Plots a 2D simplex
-
project2D() - Project 3D probability coordinates onto 2D simplex coordinates
-
sample_RG() - Sample a relationship graph (RG)
-
ys_VHX_BPD - Example Plasmodium vivax data